As I have been looking into this more, it may be related to a specific print file. I never had this problem before. However, a specific print had some GCode that specified the hot-end change temps for extruder 1 (T1) at the time of tool change. This was actually a problem as it was setting my "cooldown" temps to the active extruder, but it immediately set the working temp after. When it would pause and then I hit resume it would sometimes show the correct working temps, but other times not.
I manually went through the GCode to fix this problem rather than re-slicing and uploaded to the Duet. It ran through the entire print without a hitch. Once I get enough of the parts pushed out I will attempt to go back to the unmodified GCode and see if it actually had anything to do with the G10 codes occurring in succession or if the code was just messed up. OR look for Gremlins...
The GCode I removed throughout the file was as follows:
G10 P0 S210 G10 P0 S240and
G10 P1 S210 G10 P1 S245