BOSSA fork supporting SAM4E* MCUs
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I discovered this fork when trying to write to the firmware to the flash memory via bossac: https://github.com/NorthboundNetworks/Bossa
After building, use bossash for erasing and writing; verifying via bossac and bossash will show success. For some reason erasing and writing via bossac fails. After writing the firmware make sure to do [c]bossac -b[/c]. No more need for the proprietary SAM-BA software!