I might be onto something:
I cut off the pins that I don't need on the 2209 from the J3 column (pins 2, 3 & 5).
After declaring the drivers in the board.txt file this is the status of the drivers from m122:
(I think my driver 1 socked is broken, no matter what I put in there it sais that there is no driver, I will look into it some other time)
Now I need to reconnect the cables to the board as before so that I can go on with testing.
Update:
Succes! All axis moving as they should.