So I spent a few hours over a couple of days trying to figure this problem out, then spent a day reading the internet to see if anyone else had it, followed by posting a description of the problem.
Within a day, I get one of the best answers I've gotten on any forum in the last ten years. So guess what happens when I go check the problem again?
Evil invisible dust bunny has fled. Computer acts like nothing was ever wrong. Thank you for the magic blue smoke engineer voodoo.
The 6HC and three 1HCL boards CAN bus links up within a second of booting. It all works perfectly and is a modest complement to my building skills (no comment on my cleaning skills).
"replacement under warranty" - that's what I was trying to avoid. I do not like returning goods to well-meaning manufacturers and frankly... returning open-source hardware is against my religion. Everything else about the Duet3D hardware/firmware/software is working perfectly by the docs. I'm very impressed!

Thank you again for the assistance, I have so many many questions. 