It appears to be working after going back through and remaking the configuration in the configurator, maybe something didn't like transferring over from 2.0 firmware with the updates but it's working now! thank you for the help!

It appears to be working after going back through and remaking the configuration in the configurator, maybe something didn't like transferring over from 2.0 firmware with the updates but it's working now! thank you for the help!

@Phaedrux I will give that a try, I wasn't seeing where could specify the pt1000 in configurator

also, the z having different variables is because I have 2 different motors - independent z - and one has a 16:20 tooth pulley setup while other has a 20:20 tooth pulley setup going into a t8 leadscrew, the settings I have set make it accurate to the mm for the z on that front from testing

I just used configurator tool for that part, I have dual hotends which is why there is double. I'll adjust the g31 later but focusing on the little things functioning in general before I focus on offsets necessarily

I left the g31 value as it was, and the z is actually working fine now, it's going up and down on the z without issues as well as probing with the settings listed above, but still haven't figured out why my pt1000s disappeared, they show up for half a second when initially booting but then it goes away for some reason....

just changed m308 "thermistor" over to "pt1000" and still not coming up for some reason

; Configuration file for Duet WiFi (firmware version 3)
; executed by the firmware on start-up
;
; generated by RepRapFirmware Configuration Tool v3.1.4 on Wed Jul 15 2020 11:55:59 GMT-0500 (Central Daylight Time)

; General preferences
G90                                                       ; send absolute coordinates...
M83                                                       ; ...but relative extruder moves
M550 P"My Printer"                                        ; set printer name
M669 K1                                                   ; select CoreXY mode

; Network
M552 S1                                                   ; enable network
M586 P0 S1                                                ; enable HTTP
M586 P1 S1                                                ; enable FTP
M586 P2 S1                                                ; enable Telnet

; Drives
M569 P0 S1                                                ; physical drive 0 goes forwards
M569 P1 S1                                                ; physical drive 1 goes forwards
M569 P2 S1                                                ; physical drive 2 goes backwards
M569 P3 S1                                                ; physical drive 3 goes forwards
M569 P4 S1                                                ; physical drive 4 goes forwards
M569 P5 S1                                                ; physical drive 5 goes forwards
M584 X0 Y1 Z2:5 E3:4                                      ; set drive mapping
m671 x-20:370 y48.5:48.5 s0.5
m208 x0:350 y-168:267
M350 X16 Y16 Z16:16 E16:16 I1                             ; configure microstepping with interpolation
M92 X100.00 Y100.00 Z400.00:200 E436.54:436.54  			; set steps per mm
M566 X1500.00 Y1500.00 Z12.00:12 E120.00:120.00       ; set maximum instantaneous speed changes (mm/min)
M203 X6000.00 Y6000.00 Z180:180 E12000.00:12000.00 ; set maximum speeds (mm/min)
M201 X500.00 Y500.00 Z20.00:20 E1000.00:1000.00      ; set accelerations (mm/s^2)
M906 X1500 Y1500 Z1500:1500 E1000:1000 I30                ; set motor currents (mA) and motor idle factor in per cent
M84 S30                                                   ; Set idle timeout

; Axis Limits
M208 X0 Y-163 Z0 S1                                       ; set axis minima
M208 X350 Y260 Z400 S0                                    ; set axis maxima

; Endstops
M574 X1 S1 P"xstop"                                       ; configure active-high endstop for low end on X via pin xstop
M574 Y1 S1 P"ystop"                                       ; configure active-high endstop for low end on Y via pin ystop
M574 Z1 S2                                                ; configure Z-probe endstop for low end on Z

; Z-Probe
M950 S0 C"duex.pwm5"                                      ; create servo pin 0 for BLTouch
M558 P9 C"^zprobe.in" H0 F120 T6000                       ; set Z probe type to bltouch and the dive height + speeds
G31 P500 X0 Y0 Z2.5                                       ; set Z probe trigger value, offset and trigger height
M557 X15:215 Y-148:195 S20                                ; define mesh grid

; Heaters
M308 S0 P"bedtemp" Y"thermistor" T100000 B4138            ; configure sensor 0 as thermistor on pin bedtemp
M950 H0 C"bedheat" T0                                     ; create bed heater output on bedheat and map it to sensor 0
M307 H0 B0 S1.00                                          ; disable bang-bang mode for the bed heater and set PWM limit
M140 H0                                                   ; map heated bed to heater 0
M143 H0 S120                                              ; set temperature limit for heater 0 to 120C
M308 S1 P"e0temp" Y"thermistor" T100000 B4138             ; configure sensor 1 as thermistor on pin e0temp
M950 H1 C"e0heat" T1                                      ; create nozzle heater output on e0heat and map it to sensor 1
M307 H1 B0 S1.00                                          ; disable bang-bang mode for heater  and set PWM limit
M308 S2 P"e0temp" Y"thermistor" T100000 B4138             ; configure sensor 2 as thermistor on pin e0temp
M950 H2 C"e1heat" T2                                      ; create nozzle heater output on e1heat and map it to sensor 2
M307 H2 B0 S1.00                                          ; disable bang-bang mode for heater  and set PWM limit

; Fans
M950 F0 C"fan0" Q500                                      ; create fan 0 on pin fan0 and set its frequency
M106 P0 S0 H-1                                            ; set fan 0 value. Thermostatic control is turned off
M950 F1 C"fan1" Q500                                      ; create fan 1 on pin fan1 and set its frequency
M106 P1 S1 H1 T45                                         ; set fan 1 value. Thermostatic control is turned on
M950 F2 C"fan2" Q500                                      ; create fan 2 on pin fan2 and set its frequency
M106 P2 S1 H2 T45                                         ; set fan 2 value. Thermostatic control is turned on

; Tools

; Custom settings are not defined

; Miscellaneous
M575 P1 S1 B57600                                         ; enable support for PanelDue

@droftarts I'm aware, I wanted to dip my toes in the water with reprap and stuff before spending the premium for the nicer ones with higher quality and a friend had this to loan to me while I test and compare to my klipper/marlin experience, not sure why but after updating to reprap 3.11 it no longer detects my pt1000 thermistor

second update - after looking back over the wiring diagram again I found another jumper pin I missed, bltouch is now probing and onto figuring out the Z haha

here are some images of how I have it wired in, and here is how I have it configured config.g based on just the configurator just updated to v3.11 per your reccomendation