I installed a new Duet2 Ethernet v1.04c with 3.11 firmware but now I am having several issues...

Firstly, my PanelDue 5i is not functioning at all and it is enabled in the config.

Secondly my z end stop seems to be the only functioning end stop. It is the only switch that lights up the LED.

Next, when trying to move an axis I am given the following error "Warning: motor phase B may be disconnected reported by driver(s) 2"

Last thing I am noticing is that the BL Touch is not deploying and retracting when I boot the machine up.

Config

; Configuration file for Duet WiFi (firmware version 3)
; executed by the firmware on start-up
;
; generated by RepRapFirmware Configuration Tool v3.1.9 on Tue Dec 01 2020 12:40:10 GMT-0800 (Pacific Standard Time)

; General preferences
G90                                                       ; send absolute coordinates...
M83                                                       ; ...but relative extruder moves
M550 P"S110 Tall"                                         ; set printer name

; Network
M552 P0.0.0.0 S1                                          ; enable network and acquire dynamic address via DHCP
M586 P0 S1                                                ; enable HTTP
M586 P1 S0                                                ; disable FTP
M586 P2 S0                                                ; disable Telnet

; Drives
M569 P0 S1                                                ; physical drive 0 goes forwards
M569 P1 S1                                                ; physical drive 1 goes forwards
M569 P2 S1                                                ; physical drive 2 goes forwards
M569 P3 S1                                                ; physical drive 3 goes forwards
M569 P4 S1                                                ; physical drive 4 goes forwards
M584 X0 Y1 Z2 E3:4                                        ; set drive mapping
M350 X16 Y16 Z16 E16:16 I1                                ; configure microstepping with interpolation
M92 X400.00 Y400.00 Z400.00 E420.00:420.00                ; set steps per mm
M566 X900.00 Y900.00 Z12.00 E120.00:120.00                ; set maximum instantaneous speed changes (mm/min)
M203 X6000.00 Y6000.00 Z180.00 E1200.00:1200.00           ; set maximum speeds (mm/min)
M201 X500.00 Y500.00 Z20.00 E250.00:250.00                ; set accelerations (mm/s^2)
M906 X800 Y800 Z800 E800:800 I50                          ; set motor currents (mA) and motor idle factor in per cent
M84 S50                                                   ; Set idle timeout

; Axis Limits
M208 X0 Y0 Z0 S1                                          ; set axis minima
M208 X210 Y260 Z500 S0                                    ; set axis maxima

; Endstops
M574 X1 S1 P"xstop"                                       ; configure active-high endstop for low end on X via pin xstop
M574 Y1 S1 P"ystop"                                       ; configure active-high endstop for low end on Y via pin ystop
M574 Z1 S1 P"zstop"                                       ; configure active-high endstop for low end on Z via pin zstop

; Z-Probe
M950 S0 C"exp.heater3"                                    ; create servo pin 0 for BLTouch
M558 P9 C"^zprobe.in" H5 F120 T6000                       ; set Z probe type to bltouch and the dive height + speeds
G31 P500 X0 Y20 Z2.5                                      ; set Z probe trigger value, offset and trigger height
M557 X10:200 Y10:200 S80                                  ; define mesh grid

; Heaters
M308 S0 P"bedtemp" Y"thermistor" T100000 B4138            ; configure sensor 0 as thermistor on pin bedtemp
M950 H0 C"bedheat" T0                                     ; create bed heater output on bedheat and map it to sensor 0
M307 H0 B0 S1.00                                          ; disable bang-bang mode for the bed heater and set PWM limit
M140 H0                                                   ; map heated bed to heater 0
M143 H0 S100                                              ; set temperature limit for heater 0 to 100C
M308 S1 P"e0temp" Y"thermistor" T500000 B4723 C1.19622e-7 ; configure sensor 1 as thermistor on pin e0temp
M950 H1 C"e0heat" T1                                      ; create nozzle heater output on e0heat and map it to sensor 1
M307 H1 B0 S1.00                                          ; disable bang-bang mode for heater  and set PWM limit
M143 H1 S280                                              ; set temperature limit for heater 1 to 280C
M308 S2 P"e1temp" Y"thermistor" T500000 B4723 C1.19622e-7 ; configure sensor 2 as thermistor on pin e1temp
M950 H2 C"e1heat" T2                                      ; create nozzle heater output on e1heat and map it to sensor 2
M307 H2 B0 S1.00                                          ; disable bang-bang mode for heater  and set PWM limit
M143 H2 S280                                              ; set temperature limit for heater 2 to 280C

; Fans
M950 F0 C"fan0" Q500                                      ; create fan 0 on pin fan0 and set its frequency
M106 P0 S0 H-1                                            ; set fan 0 value. Thermostatic control is turned off
M950 F1 C"fan1" Q500                                      ; create fan 1 on pin fan1 and set its frequency
M106 P1 S1 H1:2 T45                                       ; set fan 1 value. Thermostatic control is turned on
M950 F2 C"fan1" Q500                                      ; create fan 2 on pin fan1 and set its frequency
M106 P2 S1 H1:2 T45                                       ; set fan 2 value. Thermostatic control is turned on

; Tools
M563 P0 D0 H1 F0                                          ; define tool 0
G10 P0 X0 Y0 Z0                                           ; set tool 0 axis offsets
G10 P0 R0 S0                                              ; set initial tool 0 active and standby temperatures to 0C
M563 P1 D1 H2 F0                                          ; define tool 1
G10 P1 X0 Y0 Z0                                           ; set tool 1 axis offsets
G10 P1 R0 S0                                              ; set initial tool 1 active and standby temperatures to 0C

; Custom settings are not defined

; Miscellaneous
M575 P1 S1 B57600                                         ; enable support for PanelDue

M122

=== Diagnostics ===
RepRapFirmware for Duet 2 WiFi/Ethernet version 3.1.1 running on Duet Ethernet 1.02 or later
Board ID: 0JD0M-9P6M2-NW4SS-6J9D6-3SN6M-TVWBK
Used output buffers: 1 of 24 (11 max)
=== RTOS ===
Static ram: 27980
Dynamic ram: 93816 of which 48 recycled
Exception stack ram used: 344
Never used ram: 8884
Tasks: NETWORK(ready,384) HEAT(blocked,464) MAIN(running,1816) IDLE(ready,80)
Owned mutexes:
=== Platform ===
Last reset 00:03:25 ago, cause: power up
Last software reset details not available
Error status: 0
MCU temperature: min 21.6, current 25.1, max 25.3
Supply voltage: min 24.0, current 24.1, max 24.1, under voltage events: 0, over voltage events: 0, power good: yes
Driver 0: standstill, SG min/max 0/248
Driver 1: standstill, SG min/max not available
Driver 2: standstill, SG min/max not available
Driver 3: standstill, SG min/max not available
Driver 4: standstill, SG min/max not available
Date/time: 2020-12-01 12:45:33
Cache data hit count 416902523
Slowest loop: 5.92ms; fastest: 0.12ms
I2C nak errors 0, send timeouts 0, receive timeouts 0, finishTimeouts 0, resets 0
=== Storage ===
Free file entries: 10
SD card 0 detected, interface speed: 20.0MBytes/sec
SD card longest read time 3.8ms, write time 0.0ms, max retries 0
=== Move ===
Hiccups: 0(0), FreeDm: 169, MinFreeDm: 168, MaxWait: 42194ms
Bed compensation in use: none, comp offset 0.000
=== MainDDARing ===
Scheduled moves: 5, completed moves: 5, StepErrors: 0, LaErrors: 0, Underruns: 0, 0  CDDA state: -1
=== AuxDDARing ===
Scheduled moves: 0, completed moves: 0, StepErrors: 0, LaErrors: 0, Underruns: 0, 0  CDDA state: -1
=== Heat ===
Bed heaters = 0 -1 -1 -1, chamberHeaters = -1 -1 -1 -1
=== GCodes ===
Segments left: 0
Movement lock held by null
HTTP is idle in state(s) 0
Telnet is idle in state(s) 0
File is idle in state(s) 0
USB is idle in state(s) 0
Aux is idle in state(s) 0
Trigger is idle in state(s) 0
Queue is idle in state(s) 0
Daemon is idle in state(s) 0
Autopause is idle in state(s) 0
Code queue is empty.
=== Network ===
Slowest loop: 7.84ms; fastest: 0.02ms
Responder states: HTTP(0) HTTP(0) HTTP(0) HTTP(0) FTP(0) Telnet(0), 0 sessions
HTTP sessions: 1 of 8
Interface state active, link 100Mbps full duplex

M98 P"config.g"

M98 P"config.g"
HTTP is enabled on port 80
FTP is disabled
TELNET is disabled
Warning: Heater 0 appears to be over-powered. If left on at full power, its temperature is predicted to reach 365C
Error: Pin 'fan1' is not free
Error: Fan number 2 not found
Error: Heater 1 fault: heater monitor 0 was triggered
Error: Heater 2 fault: heater monitor 0 was triggered

(I still need to configure my thermistors, that's why I'm getting heater faults)

What am I missing here?

@Phaedrux I'm not worried about the old board, but I shorted it out trying to read a fan voltage. It's definitely toasted. The new board, though, that isn't working straight out of the box. This is the board I referred to above.

@bearer Yes, new Duet2 Ethernet V 1.04c. The previous board was v1.04b

It's being powered by a 24v Power supply

So last week I fried my board while trying to get a reading with my multimeter. It actually fried the micro SD card which is a first for me. Lost my config file that I of course did not have backed up. Today I installed a new board but now I am having several issues...

Firstly, my PanelDue 5i is not functioning at all and it is enabled in the config.

Secondly my z end stop seems to be the only functioning end stop. It is the only switch that lights up the LED.

Next, when trying to move an axis I am given the following error "Warning: motor phase B may be disconnected reported by driver(s) 2"

Last thing I am noticing is that the BL Touch is not deploying and retracting when I boot the machine up.

How about we just start with that. Where do I even begin??

I have the printer up and running now thanks to all your help. Couple more questions for you- I have a 5v layer fan that I'd like to use as fan2. Fan0 and Fan1 are my 24v hotend fans. I understand I can use this by using a jumper. I'm not sure which jumper and how I would need to modify the config file.

Second question is, is it possible to run a 5v servo motor
with only the duet2 or do I need an expansion board?

@Veti I have most of RR3 setup now, but I can not for the life of me get the BL Touch to deploy or retract or release it's alarm. I've been pulling my hair out over this.

@Veti I ran a comparison of the two config files after generating a new one. I've taken over someone else project but luckily I did find the previously used json. Going to boot up and see what happens.

; Configuration file for Duet WiFi (firmware version 3)
; executed by the firmware on start-up
;
; generated by RepRapFirmware Configuration Tool v3.1.4 on Sat Oct 10 2020 12:16:23 GMT-0700 (Pacific Daylight Time)

; General preferences
G90                                                       ; send absolute coordinates...
M83                                                       ; ...but relative extruder moves
M550 P"The Beast"                                        ; set printer name

; Network
M552 S1                                                   ; enable network
M586 P0 S1                                                ; enable HTTP
M586 P1 S0                                                ; disable FTP
M586 P2 S0                                                ; disable Telnet

; Drives
M569 P0 S1                                                ; physical drive 0 goes forwards
M569 P1 S1                                                ; physical drive 1 goes forwards
M569 P2 S1                                                ; physical drive 2 goes forwards
M569 P3 S1                                                ; physical drive 3 goes forwards
M569 P4 S1                                                ; physical drive 4 goes forwards
M584 X0 Y1 Z2 E3:4                                        ; set drive mapping
M350 X16 Y16 Z16 E16:16 I1                                ; configure microstepping with interpolation
M92 X400.00 Y400.00 Z400.00 E420.00:420.00                ; set steps per mm
M566 X900.00 Y900.00 Z12.00 E120.00:120.00                ; set maximum instantaneous speed changes (mm/min)
M203 X6000.00 Y6000.00 Z180.00 E1200.00:1200.00           ; set maximum speeds (mm/min)
M201 X500.00 Y500.00 Z20.00 E250.00:250.00                ; set accelerations (mm/s^2)
M906 X800 Y800 Z800 E800:800 I30                          ; set motor currents (mA) and motor idle factor in per cent
M84 S50                                                   ; Set idle timeout

; Axis Limits
M208 X0 Y0 Z0 S1                                          ; set axis minima
M208 X210 Y260 Z500 S0                                    ; set axis maxima

; Endstops
M574 X1 S1 P"xstop"                                       ; configure active-high endstop for low end on X via pin xstop
M574 Y1 S1 P"ystop"                                       ; configure active-high endstop for low end on Y via pin ystop
M574 Z1 S1 P"zstop"                                       ; configure active-high endstop for low end on Z via pin zstop

; Z-Probe
M950 S0 C"exp.heater3"                                    ; create servo pin 0 for BLTouch
M558 P9 C"^zprobe.in" H5 F120 T6000                       ; set Z probe type to bltouch and the dive height + speeds
G31 P500 X0 Y20 Z2.5                                      ; set Z probe trigger value, offset and trigger height
M557 X10:200 Y10:200 S80                                  ; define mesh grid

; Heaters
M308 S0 P"e0temp" Y"thermistor" T500000 B4723 C1.19622e-7 ; configure sensor 0 as thermistor on pin e0temp
M950 H0 C"e0heat" T0                                      ; create nozzle heater output on e0heat and map it to sensor 0
M307 H0 B0 S1.00                                          ; disable bang-bang mode for heater  and set PWM limit
M308 S1 P"e1temp" Y"thermistor" T500000 B4723 C1.19622e-7 ; configure sensor 1 as thermistor on pin e1temp
M950 H1 C"e1heat" T1                                      ; create nozzle heater output on e1heat and map it to sensor 1
M307 H1 B0 S1.00                                          ; disable bang-bang mode for heater  and set PWM limit
M308 S2 P"bedtemp" Y"thermistor" T100000 B4138            ; configure sensor 2 as thermistor on pin bedtemp
M950 H2 C"bedheat" T2                                     ; create bed heater output on bedheat and map it to sensor 2
M307 H2 B0 S1.00                                          ; disable bang-bang mode for the bed heater and set PWM limit
M140 H2                                                   ; map heated bed to heater 2
M143 H2 S280                                              ; set temperature limit for heater 2 to 280C

; Fans
M950 F0 C"fan0" Q500                                      ; create fan 0 on pin fan0 and set its frequency
M106 P0 C"E0 Fan" S1 H1:2 T45                             ; set fan 0 name and value. Thermostatic control is turned on
M950 F1 C"fan1" Q500                                      ; create fan 1 on pin fan1 and set its frequency
M106 P1 C"E1 Fan" S1 H1:2 T45                             ; set fan 1 name and value. Thermostatic control is turned on
M950 F2 C"fan2" Q500                                      ; create fan 2 on pin fan2 and set its frequency
M106 P2 C"Layer Fan" S1 H-1                               ; set fan 2 name and value. Thermostatic control is turned off

; Tools
M563 P0 S"Extruder 0" D0 H1 F0:2                          ; define tool 0
G10 P0 X0 Y0 Z0                                           ; set tool 0 axis offsets
G10 P0 R0 S0                                              ; set initial tool 0 active and standby temperatures to 0C
M563 P1 S"Extruder 1" D1 F0:2                             ; define tool 1
G10 P1 X0 Y0 Z0                                           ; set tool 1 axis offsets
G10 P1 R0 S0                                              ; set initial tool 1 active and standby temperatures to 0C

; Custom settings are not defined

; Miscellaneous
M575 P1 S1 B57600                                         ; enable support for PanelDue

; Configuration file for Duet WiFi (firmware version 2.03)
; executed by the firmware on start-up
;
; generated by RepRapFirmware Configuration Tool v2.1.8 on Thu Mar 05 2020 07:51:50 GMT-0800 (Pacific Standard Time)

; General preferences
G90                                             ; send absolute coordinates...
M83                                             ; ...but relative extruder moves
M550 P"S110 Tall"                               ; set printer name

; Network
M552 P0.0.0.0 S1                                ; enable network and acquire dynamic address via DHCP
M586 P0 S1                                      ; enable HTTP
M586 P1 S0                                      ; disable FTP
M586 P2 S0                                      ; disable Telnet

; Drives
M569 P0 S1                                      ; physical drive 0 goes forwards
M569 P1 S0                                      ; physical drive 1 goes forwards
M569 P2 S0                                      ; physical drive 2 goes forwards
M569 P3 S0                                      ; physical drive 3 goes forwards
M569 P4 S0                                      ; physical drive 4 goes forwards
M584 X0 Y1 Z2 E3:4                              ; set drive mapping
M350 X16 Y16 Z16 E16:16 I1                      ; configure microstepping with interpolation
M92 X400.00 Y400.00 Z400.00 E420.00:420.00      ; set steps per mm
M566 X700.00 Y700.00 Z212.00 E120.00:120.00     ; set maximum instantaneous speed changes (mm/min)
M203 X4000.00 Y4000.00 Z1000.00 E400.0:400.0  ; set maximum speeds (mm/min)
M201 X200.00 Y200.00 Z80.00 E250.00:250.00     ; set accelerations (mm/s^2)
M906 X800 Y800 Z800 E500:500 I50                ; set motor currents (mA) and motor idle factor in per cent
M84 S50                                         ; Set idle timeout

; Axis Limits
M208 X0 Y0 Z0 S1                                ; set axis minima
M208 X210 Y260 Z500 S0                          ; set axis maxima

; Endstops
M574 X1 Y1 S1                                   ; set active high endstops
M574 Z1 S1                                      ; set endstops controlled by [probe] no, by microswitch 03/07/2020

Z-Probe
M307 H3 A-1 C-1 D-1                             ; disable heater on PWM channel for BLTouch
M558 P9 H1 F120 T5000                           ; set Z probe type to bltouch and the dive height + speeds
G31 P500 X0 Y20 Z2.5                            ; set Z probe trigger value, offset and trigger height
M557 X10:200 Y10:200 S80                        ; define mesh grid

; Heaters
M305 P0 T100000 B4339 R4700                     ; configure PT1000 for heater 0
M143 H0 S100                                    ; set temperature limit for heater 0 to 100C
M305 P1 T500000 B4723 C1.196220e-7 R4700        ; set thermistor + ADC parameters for heater 1
M143 H1 S250                                    ; set temperature limit for heater 1 to 350C
M305 P2 T500000 B4723 C1.196220e-7 R4700        ; set thermistor + ADC parameters for heater 2
M143 H2 S250                                    ; set temperature limit for heater 2 to 350C
M307 H1:2 A250 c160 D5.5 B0 S0.3 		; set max heater power to 60% to reduce overshoot (DNC 03/12/2020)

; Fans
M106 P0 S0 I0 F500 H-1                          ; set fan 0 value, PWM signal inversion and frequency. Thermostatic control is turned off
M106 P1 S1 I0 F500 H1:2 T45                     ; set fan 1 value, PWM signal inversion and frequency. Thermostatic control is turned on
M106 P2 S1 I0 F500 H1:2 T45                     ; set fan 2 value, PWM signal inversion and frequency. Thermostatic control is turned on

; Tools
M563 P0 D0 H1 F0                                ; define tool 0
G10 P0 X0 Y0 Z0                                 ; set tool 0 axis offsets
G10 P0 R0 S0                                    ; set initial tool 0 active and standby temperatures to 0C
M563 P1 D1 H2 F1                                ; define tool 1
G10 P1 X0 Y0 Z0                                 ; set tool 1 axis offsets
G10 P1 R0 S0                                    ; set initial tool 1 active and standby temperatures to 0C

; Custom settings are not defined

@Veti
What is the best method to post my config for ease of reading?

@Phaedrux I was able to flash the firmware, and while I can now web into the board and shows connection established, my PanelDue contently displays Connecting. None of my macros are displayed on the panel although the web interface does display my macros. My extruder heaters are undefined. No thermistor readings. Some weird things happening. Even a simple M119 reports Endstops - X: no endstop, Y: no endstop, Z: no endstop, Z probe: at min stop

I'm not even sure where to begin with this. It's like it isn't reading the config file properly. Using the same config I was previously using that was working fine before erasing the board and starting fresh