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@timschneider Thanks for sharing. Now i doubt it is CAN related problem. Maybe SPI communication is not keeping up with all this data being transfered and written to sd card? Im curious if this problem happens for standalone users.
@dc42 Oh i was not aware you have forked version on your github. It compiles fine now. Thanks for help.
@ketirange Turns out a motor connector and cable was faulty, and after replacing it im able to perform a calibration move.
@dc42 Thank you for your help, changing to Exint 3 did the trick, and now accelerometer is working fine. I wil keep in mind the PB3 conflict.