Did the configuration according your proposal and can verify it's working.
For reference here are the relevant parts.
config.g
[[language]]
M581 Y1:0 S1 T0 C0 ; Emergency Stop everytime E1 (Y-Min) is triggered
homey.g
[[language]]
M581 Y1:0 S-1 T0 C0; Disable Y-Min Emergency Stop
G91 ; relative positioning
G1 Z5 F6000 ; lift Z relative to current position
G1 S1 Y-293 F1800 ; move quickly to Y axis endstop and stop there (first pass)
G1 Y5 F6000 ; go back a few mm
G1 S1 Y-293 F360 ; move slowly to Y axis endstop once more (second pass)
G1 Y1 F6000 ; move out of endstop by 1mm
G92 Y0 ; Set Y to 0
G1 Z-5 F6000 ; lower Z again
G90 ; absolute positioning
M581 Y1:0 S1 T0 C0; Enable Y-Min Emergency Stop