On the effector I have 2 hotends that can rotate, if head 1 is active head 2 sits a couple of mm above the print bed.
The difference in height between the 2 heads is minimal, 0.2mm or so, and can vary a bit every time I replace or remount the nozzle, in my experience remounting the nozzle can have a small impact on the z-height.
I don't home between prints, so that shouldn't cause the issue