I have a macro to probe the bed height at each tower base, after disabling any bed transform. My bed can be 0.2mm different at one tower to another but this doesn't stop me achieving 0.008 deviation after calibration so it can cope with slight tilt . I can print a 300mm spiral with perfect height all over the bed. You can use this macro once it's calibrated or after grid levelling, but without the gcode to disable transform, and it should read level.