@Chrashem I find that very odd. I frequently abort prints on a CoreXY machine and I have never encountered this issue. Neither has anyone else reported it. So I suspect that something is wrong more generally with your Z axis. Some suggestions:
Have you tried reverting to the older firmware, to make sure this isn't a hardware or configuration issue that happened to coincide with the firmware update?
Are you sure that you haven't inadvertently set the Z max speed or acceleration too high, or the motor current too low?